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• Kutashev K, Meschichi A, Reeck S, Fonseca A, Sartori K, White CI, Sicard A, Rosa S* (2024). Differences in RAD51 transcriptional response and cell cycle dynamics reveal varying sensitivity to DNA damage among Arabidopsis thaliana root cell types. New Phytologist 243(3):966-980. corresponding author

 

• Fonseca A, Rosa S. (2024). Detection and automated quantification of nucleocytoplasmic RNA fractions in Arabidopsis using smFISH. Methods in Molecular Biology (Springer Protocols), In press

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• Fonseca A, E Riveras, Moyano T, Rosa S, Gutiérrez R (2024) Dynamic changes in mRNA nucleocytoplasmic localization in the nitrate response of Arabidopsis roots. Plant, Cell & Environment, doi: 10.1111/pce.15018

 

• Meschichi A, Rosa S* (2024) Plant chromatin on the move: an overview of chromatin mobility during transcription and DNA repair. The Plant Journal, 118(4):953-962. corresponding author

 

•Woźniak NJ, Sartori K, Kappel C, Tran TC, Zhao L, Erban A, Gallinger J, Fehrle I, Jantzen F, Orsucci M, Ninkovic V, Rosa S, Lenhard M, Kopka J and Sicard A (2024). Convergence and molecular evolution of floral fragrance after independent transitions to self-fertilization. Current Biology, 34 (12):2702-2711.

 

• Tremblay B, Santini CP, Cheng Y, Zhang X, Rosa S, Qüesta J (2024) Interplay between coding and non-coding regulation drives the Arabidopsis seed-to-seedling transition. Nature Communications 15, 1724.

 

• Zhao, L., Fonseca, A., Meschichi, A., Sicard A*, Rosa S* (2023) Whole-mount smFISH allows combining RNA and protein quantification at cellular and subcellular resolution. Nature Plants; doi: 10.1038/s41477-023-01442-9. corresponding authors

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          Sicard A, Rosa S (2023). Research Briefing: Visualizing and counting single RNA molecules in intact plant tissues.       Nature Plants; doi:10.1038/s41477-023-01448-3

 

• Antoniou-Kourounioti RL, Meschichi A, Reeck S, Berry S, Menon G, Zhao Y, Fozard J, Holmes T, Wang H, Hartley M, Dean C*, Rosa S*, Howard M* (2023) Integrating analog and digital modes of gene expression at Arabidopsis FLC. eLife 2023;12:e79743. *co-corresponding authors

 

• Meschichi A, Reeck S, Sicard A, Pontvianne F, Rosa S (2022) The plant-specific DDR factor SOG1 increases chromatin mobility in response to DNA damage. EMBO Reports 23:e54736

 

• Meschichi A, Ingouff M, Picart C, Mirouze M, Desset S, Gallardo F, Bystricky K, Picault N, Rosa S, Pontvianne F (2021) ANCHOR: A Technical Approach to Monitor Single-Copy Locus Localization in Planta. Frontiers in Plant Sciences 12:677849.

 

• Meschichi A, Rosa S* (2021) Visualizing and Measuring Single Locus Dynamics in Arabidopsis thaliana. Methods in Molecular Biology 2200:213-224. corresponding author

 

• Santos AP, Gaudin V, Mozgová I, Pontvianne F, Schubert D, Tek AL, Dvořáčková M, Liu C, Fransz P, Rosa S*, Farrona S* (2020) Tidying-up the plant nuclear space: domains, functions, and dynamics. Journal of Experimental Botany 71, 5160-5178. *corresponding authors

 

• Qüesta J, Antoniou-Kourounioti RL, Rosa S, Li P, Duncan S, Whittaker C, Howard H, Dean C (2020) Noncoding SNPs influence a distinct phase of Polycomb silencing to destabilize long-term epigenetic memory at Arabidopsis FLC. Genes and Development 34, 446-461.

 

• Antoniou-Kourounioti RL, Hepworth J, Heckmann A, Duncan S, Questa J, Rosa S, Holm S, Dean C, Howard M. (2018) Temperature sensitivity is distributed throughout the regulatory network mediating registration of winter cold. Cell Systems 7(6) 643-655.

 

• Fritz M, Rosa S, Sicard A. (2018) Mechanisms underlying the environmentally-induced plasticity of leaf shape. Frontiers in Genetics 9. doi: 10.3389/fgene.2018.00478.

 

• Vukoja A, Rey U, Petzoldt AG, Ott C, Vollweiter D, Quentin C, Puchkov D, Reynolds E, Lehmann M, Hohensee S, Rosa S, Lipowsky R, Sigrist SJ, Haucke V. (2018) Presynaptic Biogenesis Requires Axonal Transport of Lysosome-Related Vesicles. Neuron 99(3), 1216-1232.

 

• Rosa S. (2018) Measuring dynamics of histone proteins by photobleaching. Methods in Molecular Biology 1675:455-465. doi: 10.1007/978-1-4939-7318-7_26.

 

• Duncan S, Rosa S* (2018) Gaining insight into plant gene transcription using smFISH. Transcription 9: doi: 10.1080/21541264.2017.1372043 corresponding author

 

• Berry S, Rosa S, Howard M, Bühler M, Dean C. (2017) Disruption of an RNA-binding hinge region abolishes LHP1-mediated epigenetic repression. Genes and Development 31, 2115-2120.

 

• Ietswaart R#, Rosa S#, Wu Z#, Olsson T, Hartley M, Dean C and Howard M. (2017) Cell-Size-Dependent Transcription of FLC and Its Antisense Long Non-coding RNA COOLAIR Explain Cell-to-Cell Expression Variation. Cell Systems 4, 622-635. #equally contributed

 

• Duncan S, Olsson T, Hartley M, Dean C and Rosa S*. (2017) Single Molecule RNA FISH in Plant Root Cells. Bio-protocol 7(8):e2240. *corresponding author

 

• Rosa S, Duncan S, Dean C. (2016) Mutually exclusive sense–antisense transcription at FLC facilitates environmentally induced gene repression. Nature Communications 7, 13031 doi: 10.1038/ncomms13031.

 

• Duncan S, Olsson T, Hartley M, Dean C and Rosa S*. (2016) A method for detecting single mRNA molecules in Arabidopsis thaliana. Plant Methods 12:13, doi:10.1186/s13007-016-0114-x *corresponding author

 

• Rosa S*, Shaw P. (2015) Two-Photon Photoactivation to measure histone exchange dynamics in plant cells. Bio-protocol 5(20): e1628. *corresponding author

 

• Zhu D, Rosa S, Dean C. (2014) Nuclear Organization Changes and the Epigenetic Silencing of FLC during Vernalization. Journal of Molecular Biology 427, 659-69.

 

• Podufall J, Tian R, Knoche E, Puchkov D, Walter AM, Rosa S, Quentin C, Vukoja A, Jung N, Lampe A, Wichmann C, Böhme M, Depner H, Zhang YQ, Schmoranzer J, Sigrist SJ, Haucke V. (2014) A presynaptic role for the cytomatrix protein GIT in synaptic vesicle recycling. Cell Reports 7, 1417-25.

 

• Rosa S, Ntoukakis V, Ohmido N, Pendle A, Abranches R and Shaw P. (2014) Cell differentiation and development in Arabidopsis are associated with changes in histone dynamics at the single cell level. The Plant Cell 26, 4821-4833.

 

• Rosa S, De Lucia F, Mylne JS, Zhu D, Ohmido N, Pendle A, Kato N, Shaw P, Dean C. (2013) Physical clustering of FLC alleles during Polycomb-mediated epigenetic silencing in vernalization. Genes & Development 27, 1845-50.

 

• Rosa S, Shaw P. (2013) Insights into chromatin structure and dynamics in plants. Biology 2, 1378-410.

 

• Pires A., Rosa S., Castanheira S., Fevereiro P. and Abranches R. (2012) Expression of a recombinant human erythropoietin in suspension cell cultures of Arabidopsis, tobacco and Medicago. Plant Cell, Tissue and Organ Culture 110, 171-181.

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